imednet_workflows

• imednet_workflows package
  • AsyncJobPoller
    • AsyncJobPoller.__init__()
    • AsyncJobPoller.async_poll_many()
    • AsyncJobPoller.run()
  • CachedRecordsLoader
    • CachedRecordsLoader.__init__()
    • CachedRecordsLoader.get_cached_records()
    • CachedRecordsLoader.iter_cached_records()
    • CachedRecordsLoader.load_records()
    • CachedRecordsLoader.reconcile_cache()
    • CachedRecordsLoader.sync_records()
  • CategoricalNormalizer
    • CategoricalNormalizer.normalize_record()
  • ChunkedRecordPipeline
    • ChunkedRecordPipeline.__init__()
    • ChunkedRecordPipeline.map_chunks()
    • ChunkedRecordPipeline.write_parquet_chunks()
  • ConfigVersionStore
    • ConfigVersionStore.__init__()
    • ConfigVersionStore.commit_config()
    • ConfigVersionStore.db_path
    • ConfigVersionStore.diff_configs()
    • ConfigVersionStore.get_history()
    • ConfigVersionStore.rollback_config()
  • DuckDBIngestionWorkflow
    • DuckDBIngestionWorkflow.__init__()
    • DuckDBIngestionWorkflow.build_silver_view()
    • DuckDBIngestionWorkflow.ingest_revisions()
  • ExtractionResult
    • ExtractionResult.model_config
  • ExtractionStateLedger
  • FieldProfile
    • FieldProfile.model_config
  • FormProfile
    • FormProfile.model_config
  • JobPollSummary
    • JobPollSummary.__init__()
    • JobPollSummary.all_successful
    • JobPollSummary.any_failed
  • JobPoller
    • JobPoller.__init__()
    • JobPoller.poll_many()
    • JobPoller.run()
  • JobProgressCallback
    • JobProgressCallback.__init__()
  • JobStatusEvent
    • JobStatusEvent.__init__()
  • JobTimeoutError
  • LedgerState
    • LedgerState.model_config
  • NormalizationResult
    • NormalizationResult.model_config
  • QueryManagementWorkflow
    • QueryManagementWorkflow.__init__()
    • QueryManagementWorkflow.get_open_queries()
    • QueryManagementWorkflow.get_queries_by_site()
    • QueryManagementWorkflow.get_queries_for_subject()
    • QueryManagementWorkflow.get_query_state_counts()
  • RecordMapper
    • RecordMapper.__init__()
    • RecordMapper.build_hierarchy()
    • RecordMapper.dataframe()
    • RecordMapper.iter_dataframes()
  • RecordUpdateWorkflow
    • RecordUpdateWorkflow.__init__()
    • RecordUpdateWorkflow.async_create_or_update_records()
    • RecordUpdateWorkflow.create_new_record()
    • RecordUpdateWorkflow.create_or_update_records()
    • RecordUpdateWorkflow.register_subject()
    • RecordUpdateWorkflow.submit_record_batch()
    • RecordUpdateWorkflow.update_scheduled_record()
  • RegisterSubjectsWorkflow
    • RegisterSubjectsWorkflow._sdk
    • RegisterSubjectsWorkflow.__init__()
    • RegisterSubjectsWorkflow.register_subjects()
  • SchemaProfiler
    • SchemaProfiler.__init__()
    • SchemaProfiler.profile_records()
  • StandardsReadinessReport
    • StandardsReadinessReport.model_config
  • StandardsReadinessValidator
    • StandardsReadinessValidator.__init__()
    • StandardsReadinessValidator.score_records()
  • StreamState
    • StreamState.model_config
  • SubjectDataWorkflow
    • SubjectDataWorkflow.__init__()
    • SubjectDataWorkflow.get_all_subject_data()
  • SyncWorker
    • SyncWorker.__init__()
    • SyncWorker.run_forever()
    • SyncWorker.run_once()
    • SyncWorker.stop()
  • SyncWorkerConfig
    • SyncWorkerConfig.__init__()
  • TriageStore
    • TriageStore.__init__()
    • TriageStore.add_annotation()
    • TriageStore.assign_item()
    • TriageStore.get_item_last_updated()
    • TriageStore.get_journal_mode()
    • TriageStore.get_queue()
    • TriageStore.get_triage_item()
    • TriageStore.update_status()
    • TriageStore.upsert_item()
  • UATSpecification
    • UATSpecification.enabled_forms()
    • UATSpecification.forms_by_type()
    • UATSpecification.from_json()
    • UATSpecification.model_config
    • UATSpecification.validate_spec_version()
  • async_get_study_structure()
  • extract_canonical_records()
  • get_study_structure()
  • iter_chunks()
  • Subpackages
    • imednet_workflows.uat package
      • BatchSubmission
      • BulkRecordSubmissionWorkflow
      • BulkSubmissionError
      • EditCheckResultStatus
      • EditCheckVerificationReport
      • GeneratedRecordSet
      • RecordTestType
      • StudySchemaInspector
      • StudySnapshot
      • SubmissionResult
      • SyntheticRecordGenerator
      • UATExecutionEngine
      • UATFormSpec
      • UATRunPhase
      • UATRunResult
      • UATSpecification
      • UATSpecificationBuilder
      • UATSubjectSpec
      • UATVariableSpec
      • UATWorkflow
      • VariableTestStrategy
      • Submodules
      • imednet_workflows.uat.engine module
      • imednet_workflows.uat.generator module
      • imednet_workflows.uat.inspector module
      • imednet_workflows.uat.models module
      • imednet_workflows.uat.orchestrator module
      • imednet_workflows.uat.submission module
  • Submodules
  • imednet_workflows.cached_loader module
    • CachedRecordsLoader
      • CachedRecordsLoader.__init__()
      • CachedRecordsLoader.get_cached_records()
      • CachedRecordsLoader.iter_cached_records()
      • CachedRecordsLoader.load_records()
      • CachedRecordsLoader.reconcile_cache()
      • CachedRecordsLoader.sync_records()
    • get_sqlite_connection()
  • imednet_workflows.chunked_pipeline module
    • ChunkedRecordPipeline
      • ChunkedRecordPipeline.__init__()
      • ChunkedRecordPipeline.map_chunks()
      • ChunkedRecordPipeline.write_parquet_chunks()
    • iter_chunks()
  • imednet_workflows.cli module
    • setup_parser()
    • setup_subject_parser()
    • state_app()
  • imednet_workflows.config_version_control module
    • ConfigVersionStore
      • ConfigVersionStore.__init__()
      • ConfigVersionStore.commit_config()
      • ConfigVersionStore.db_path
      • ConfigVersionStore.diff_configs()
      • ConfigVersionStore.get_history()
      • ConfigVersionStore.rollback_config()
  • imednet_workflows.data_extraction module
    • DataExtractionWorkflow
      • DataExtractionWorkflow.__init__()
      • DataExtractionWorkflow.extract_audit_trail()
      • DataExtractionWorkflow.extract_records_by_criteria()
  • imednet_workflows.duckdb_centralizer module
    • DuckDBIngestionWorkflow
      • DuckDBIngestionWorkflow.__init__()
      • DuckDBIngestionWorkflow.build_silver_view()
      • DuckDBIngestionWorkflow.ingest_revisions()
  • imednet_workflows.extraction_engine module
    • ExtractionResult
      • ExtractionResult.model_config
    • extract_canonical_records()
  • imednet_workflows.namespace module
    • Workflows
      • Workflows.__init__()
  • imednet_workflows.query_management module
    • QueryManagementWorkflow
      • QueryManagementWorkflow.__init__()
      • QueryManagementWorkflow.get_open_queries()
      • QueryManagementWorkflow.get_queries_by_site()
      • QueryManagementWorkflow.get_queries_for_subject()
      • QueryManagementWorkflow.get_query_state_counts()
  • imednet_workflows.record_mapper module
    • RecordMapper
      • RecordMapper.__init__()
      • RecordMapper.build_hierarchy()
      • RecordMapper.dataframe()
      • RecordMapper.iter_dataframes()
  • imednet_workflows.record_update module
    • RecordUpdateWorkflow
      • RecordUpdateWorkflow.__init__()
      • RecordUpdateWorkflow.async_create_or_update_records()
      • RecordUpdateWorkflow.create_new_record()
      • RecordUpdateWorkflow.create_or_update_records()
      • RecordUpdateWorkflow.register_subject()
      • RecordUpdateWorkflow.submit_record_batch()
      • RecordUpdateWorkflow.update_scheduled_record()
  • imednet_workflows.register_subjects module
    • RegisterSubjectsWorkflow
      • RegisterSubjectsWorkflow._sdk
      • RegisterSubjectsWorkflow.__init__()
      • RegisterSubjectsWorkflow.register_subjects()
  • imednet_workflows.schema_profiler module
    • FieldProfile
      • FieldProfile.model_config
    • FormProfile
      • FormProfile.model_config
    • SchemaProfiler
      • SchemaProfiler.__init__()
      • SchemaProfiler.profile_records()
  • imednet_workflows.standards_validation module
    • CategoricalNormalizer
      • CategoricalNormalizer.normalize_record()
    • NormalizationResult
      • NormalizationResult.model_config
    • StandardsReadinessReport
      • StandardsReadinessReport.model_config
    • StandardsReadinessValidator
      • StandardsReadinessValidator.__init__()
      • StandardsReadinessValidator.score_records()
  • imednet_workflows.state_ledger module
    • AirflowStateProvider
      • AirflowStateProvider.delete_entry()
      • AirflowStateProvider.get_last_timestamp()
      • AirflowStateProvider.read_state()
      • AirflowStateProvider.set_last_timestamp()
      • AirflowStateProvider.transaction()
    • BaseStateProvider
      • BaseStateProvider.delete_entry()
      • BaseStateProvider.get_last_timestamp()
      • BaseStateProvider.read_state()
      • BaseStateProvider.set_last_timestamp()
      • BaseStateProvider.transaction()
    • ExtractionStateLedger
    • FileStateProvider
      • FileStateProvider.__init__()
      • FileStateProvider.delete_entry()
      • FileStateProvider.get_last_timestamp()
      • FileStateProvider.read_state()
      • FileStateProvider.set_last_timestamp()
      • FileStateProvider.transaction()
      • FileStateProvider.write_state()
    • LedgerState
      • LedgerState.model_config
    • StreamState
      • StreamState.model_config
    • StudyState
      • StudyState.model_config
    • get_state_provider()
  • imednet_workflows.study_structure module
    • async_get_study_structure()
    • get_study_structure()
  • imednet_workflows.subject_data module
    • SubjectComprehensiveData
      • SubjectComprehensiveData.model_config
    • SubjectDataWorkflow
      • SubjectDataWorkflow.__init__()
      • SubjectDataWorkflow.get_all_subject_data()
  • imednet_workflows.sync_worker module
    • SyncWorker
      • SyncWorker.__init__()
      • SyncWorker.run_forever()
      • SyncWorker.run_once()
      • SyncWorker.stop()
    • SyncWorkerConfig
      • SyncWorkerConfig.__init__()
  • imednet_workflows.triage_store module
    • TriageStore
      • TriageStore.__init__()
      • TriageStore.add_annotation()
      • TriageStore.assign_item()
      • TriageStore.get_item_last_updated()
      • TriageStore.get_journal_mode()
      • TriageStore.get_queue()
      • TriageStore.get_triage_item()
      • TriageStore.update_status()
      • TriageStore.upsert_item()