imednet_workflows

• imednet_workflows package
  • Subpackages
    • imednet_workflows.uat package
      • Submodules
      • imednet_workflows.uat.inspector module
      • imednet_workflows.uat.models module
  • Submodules
  • imednet_workflows.cached_loader module
    • CachedRecordsLoader
      • CachedRecordsLoader.__init__()
      • CachedRecordsLoader.get_cached_records()
      • CachedRecordsLoader.iter_cached_records()
      • CachedRecordsLoader.load_records()
      • CachedRecordsLoader.reconcile_cache()
      • CachedRecordsLoader.sync_records()
    • get_cache_connection()
  • imednet_workflows.chunked_pipeline module
    • ChunkedRecordPipeline
      • ChunkedRecordPipeline.__init__()
      • ChunkedRecordPipeline.map_chunks()
      • ChunkedRecordPipeline.write_parquet_chunks()
    • iter_chunks()
  • imednet_workflows.cli module
  • imednet_workflows.config_version_control module
    • ConfigVersionStore
      • ConfigVersionStore.__init__()
      • ConfigVersionStore.commit_config()
      • ConfigVersionStore.diff_configs()
      • ConfigVersionStore.get_history()
      • ConfigVersionStore.rollback_config()
  • imednet_workflows.data_extraction module
    • DataExtractionWorkflow
      • DataExtractionWorkflow.__init__()
      • DataExtractionWorkflow.extract_audit_trail()
      • DataExtractionWorkflow.extract_records_by_criteria()
  • imednet_workflows.duckdb_centralizer module
    • DuckDBIngestionWorkflow
      • DuckDBIngestionWorkflow.__init__()
      • DuckDBIngestionWorkflow.build_silver_view()
      • DuckDBIngestionWorkflow.ingest_revisions()
  • imednet_workflows.extraction_engine module
    • ExtractionResult
      • ExtractionResult.adverse_events
      • ExtractionResult.device_deficiencies
      • ExtractionResult.model_config
      • ExtractionResult.protocol_deviations
      • ExtractionResult.validation_errors
    • extract_canonical_records()
  • imednet_workflows.job_poller module
    • AsyncJobPoller
      • AsyncJobPoller.__init__()
      • AsyncJobPoller.run()
    • BaseJobPoller
    • JobPoller
      • JobPoller.__init__()
      • JobPoller.run()
    • JobTimeoutError
  • imednet_workflows.namespace module
  • imednet_workflows.query_management module
    • QueryManagementWorkflow
      • QueryManagementWorkflow.__init__()
      • QueryManagementWorkflow.get_open_queries()
      • QueryManagementWorkflow.get_queries_by_site()
      • QueryManagementWorkflow.get_queries_for_subject()
      • QueryManagementWorkflow.get_query_state_counts()
  • imednet_workflows.record_mapper module
    • RecordMapper
      • RecordMapper.__init__()
      • RecordMapper.dataframe()
      • RecordMapper.iter_dataframes()
  • imednet_workflows.record_update module
    • RecordUpdateWorkflow
      • RecordUpdateWorkflow.__init__()
      • RecordUpdateWorkflow.async_create_or_update_records()
      • RecordUpdateWorkflow.create_new_record()
      • RecordUpdateWorkflow.create_or_update_records()
      • RecordUpdateWorkflow.register_subject()
      • RecordUpdateWorkflow.submit_record_batch()
      • RecordUpdateWorkflow.update_scheduled_record()
  • imednet_workflows.register_subjects module
    • RegisterSubjectsWorkflow
      • RegisterSubjectsWorkflow._sdk
      • RegisterSubjectsWorkflow.__init__()
      • RegisterSubjectsWorkflow.register_subjects()
  • imednet_workflows.schema_profiler module
    • FieldProfile
      • FieldProfile.inferred_type
      • FieldProfile.label
      • FieldProfile.model_config
      • FieldProfile.population_rate
      • FieldProfile.unique_count
      • FieldProfile.unique_values
      • FieldProfile.variable_name
    • FormProfile
      • FormProfile.fields
      • FormProfile.form_key
      • FormProfile.form_name
      • FormProfile.model_config
      • FormProfile.record_count
    • SchemaProfiler
      • SchemaProfiler.__init__()
      • SchemaProfiler.profile_records()
  • imednet_workflows.standards_validation module
    • CategoricalNormalizer
      • CategoricalNormalizer.normalize_record()
    • NormalizationResult
      • NormalizationResult.model_config
      • NormalizationResult.normalized_record
      • NormalizationResult.warnings
    • StandardsReadinessReport
      • StandardsReadinessReport.model_config
      • StandardsReadinessReport.score
      • StandardsReadinessReport.successfully_validated_fields
      • StandardsReadinessReport.total_expected_fields
      • StandardsReadinessReport.violations
      • StandardsReadinessReport.warnings
    • StandardsReadinessValidator
      • StandardsReadinessValidator.__init__()
      • StandardsReadinessValidator.score_records()
  • imednet_workflows.state_ledger module
    • ExtractionStateLedger
      • ExtractionStateLedger.__init__()
      • ExtractionStateLedger.delete_entry()
      • ExtractionStateLedger.get_last_timestamp()
      • ExtractionStateLedger.read_state()
      • ExtractionStateLedger.set_last_timestamp()
      • ExtractionStateLedger.transaction()
      • ExtractionStateLedger.write_state()
    • LedgerState
      • LedgerState.model_config
      • LedgerState.studies
    • StreamState
      • StreamState.error_message
      • StreamState.last_run_status
      • StreamState.last_timestamp
      • StreamState.metadata
      • StreamState.model_config
      • StreamState.records_processed
    • StudyState
      • StudyState.model_config
      • StudyState.streams
  • imednet_workflows.study_structure module
    • async_get_study_structure()
    • get_study_structure()
  • imednet_workflows.subject_data module
    • SubjectComprehensiveData
      • SubjectComprehensiveData.model_config
      • SubjectComprehensiveData.queries
      • SubjectComprehensiveData.records
      • SubjectComprehensiveData.subject_details
      • SubjectComprehensiveData.visits
    • SubjectDataWorkflow
      • SubjectDataWorkflow.__init__()
      • SubjectDataWorkflow.get_all_subject_data()
  • imednet_workflows.sync_worker module
    • SyncWorker
      • SyncWorker.__init__()
      • SyncWorker.run_forever()
      • SyncWorker.run_once()
      • SyncWorker.stop()
    • SyncWorkerConfig
      • SyncWorkerConfig.__init__()
      • SyncWorkerConfig.interval_seconds
      • SyncWorkerConfig.lock_timeout_seconds
      • SyncWorkerConfig.reconcile
      • SyncWorkerConfig.study_key
  • imednet_workflows.triage_store module
    • TriageStore
      • TriageStore.__init__()
      • TriageStore.add_annotation()
      • TriageStore.assign_item()
      • TriageStore.get_item_last_updated()
      • TriageStore.get_journal_mode()
      • TriageStore.get_queue()
      • TriageStore.get_triage_item()
      • TriageStore.update_status()
      • TriageStore.upsert_item()